class: center, middle, inverse, title-slide .title[ # Reproducible science: Module 8 ] .subtitle[ ## R Git and Github: The trio ] .author[ ### <a href="dossa@xtbg.org.cn">Gbadamassi G.O. Dossa</a> ] .institute[ ### Xishuangbanna Tropical Botanical Garden, XTBG-CAS ] .date[ ### 2022/6/30 (updated: 2022-06-30) ] --- class: center # Acknowledgements The content of this module are based on materials from: .pull-right[  ] .pull-right[ [Rob Schick's materials](https://nicholas.duke.edu/people/staff/schick-phd) ] --- class: center # Hard way of doing things is Git Bash .left[ * Why shall we bother doing it hard? Simple because if ever R Studio fails, you know an alternative. The second reason is in presence of conflict you might have only one option of doing it by hand. * I agree that the integration of R git and Github is powerful ] --- class: center # Requirements to link Git and Github .left[ - Set the same email for both Git and Github - Set the same username (ideally) for both Git and Github - Make sure you configure R Studio to open Git Bash - Make sure you connect your computer/R Studio with Github Doing so will not only allow communication between Git and Github but also to allow clicking to automate actions in R studion ] --- class: center # How to link your computer to your github **securely** .left[ You need to set an SSH Key. Please follow instructions below. ] --- class: center # Setting up git in R Studio <img src="git github R studio ssh key1.png" width="100%" style="display: block; margin: auto;" /> --- class: center # Few basic git commands <img src="git github R studio ssh key2.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to create SSH key in R studio step 1 <img src="git github R studio ssh key4.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to create SSH key in R studio step 2 <img src="git github R studio ssh key5.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to create SSH key in R studio step 3 <img src="git github R studio ssh key6.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to create SSH key in R studio step 4 <img src="git github R studio ssh key7.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to create a new repository on github <img src="git github R studio ssh key8.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How to clone the repository in R studio <img src="git github R studio ssh key9.png" width="100%" style="display: block; margin: auto;" /> --- class: center # How R studio looks like repo is cloned <img src="git github R studio ssh key10.png" width="100%" style="display: block; margin: auto;" /> --- class: center, middle # Thank you for listening! Any questions now or email me at [**dossa@xtbg.org.cn**](http://people.ucas.edu.cn/~Dossa?language=en) Slides created via the R package [**xaringan**](https://github.com/yihui/xaringan). The chakra comes from [remark.js](https://remarkjs.com), [**knitr**](https://yihui.org/knitr/), and [R Markdown](https://rmarkdown.rstudio.com).